chr1 : 193,358,203 – 193,358,707
504 bp 16 TFs 1 linked gene
This 504 bp open chromatin element is linked to LINC01031 and is bound by 16 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01031 9.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:193,353,203 – 193,363,707
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
CDK8 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.CDK8.monocyte_IFNg-LPS 133 bp overlap
CEBPB 2 datasets
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 170 bp overlap
ChIP monocyte_INFg GSE98367.CEBPB.monocyte_INFg 75 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 163 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_ETOH GSE32349.CREBBP_M768.NCI-H3396_ETOH 89 bp overlap
CTCF 115 datasets
ChIP 22Rv1 ENCFF466OXN 504 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 260 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 164 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 131 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 240 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 207 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 190 bp overlap
ChIP GM23338 ENCFF531QOI 156 bp overlap
ChIP GM23338 ENCFF772DML 190 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 78 bp overlap
ChIP H9 ENCFF152GTF 216 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 312 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 208 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 227 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 210 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 327 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 188 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 206 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 291 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 139 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 127 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 191 bp overlap
ChIP HCT116 ENCFF003KHP 296 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 149 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 178 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 131 bp overlap
ChIP HEK293 ENCFF498RMM 216 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 152 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 113 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 211 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 154 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 182 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 104 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 120 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 211 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 115 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 147 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 163 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 273 bp overlap
ChIP MCF-7 ENCFF139NQI 205 bp overlap
ChIP MCF-7 ENCFF162GNE 214 bp overlap
ChIP MCF-7 ENCFF198DQX 207 bp overlap
ChIP MCF-7 ENCFF494VXA 207 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 179 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 185 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 180 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 176 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 206 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 253 bp overlap
ChIP OCI-LY1 ENCFF455ESK 330 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 360 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 285 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 221 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 248 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 210 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 100 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 152 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 357 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 243 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 134 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 237 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 216 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 143 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 166 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 341 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 197 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 179 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 136 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 113 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 190 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-4h 130 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 138 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 198 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 191 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 159 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 228 bp overlap
ChIP chondrocyte ENCFF134ORZ 390 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 224 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 139 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 134 bp overlap
ChIP endodermal cell ENCFF471YCZ 217 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 117 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 143 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 167 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 387 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 202 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 152 bp overlap
ChIP hESC_PRIMED GSE69646.CTCF.hESC_PRIMED 147 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 244 bp overlap
ChIP heart left ventricle ENCFF548XHH 292 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 140 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 151 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 129 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 148 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 180 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 146 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 169 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 171 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 199 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 229 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 160 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 291 bp overlap
ChIP mammary epithelial cell ENCFF164SPU 212 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 178 bp overlap
ChIP neural progenitor cell ENCFF420RBO 185 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 242 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 134 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 193 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 180 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 156 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 151 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 153 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 133 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF698EWO 212 bp overlap
ChIP H1 ENCFF967OJF 180 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 162 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 108 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 164 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 183 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 161 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 161 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 112 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 123 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 175 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 134 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 142 bp overlap
STAT3 5 datasets
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 159 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 151 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 149 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 158 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 153 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 227 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 294 bp overlap
ZNF596 2 datasets
ChIP HEK293 ENCFF854MGB 129 bp overlap
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 220 bp overlap
Huangfu Lab · Publications · Resources · Contact