chr1 : 188,735,663 – 188,735,850
187 bp 32 TFs 0 linked genes
This 187 bp open chromatin element has no linked target genes and is bound by 32 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:188,730,663 – 188,740,850
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 113 bp overlap
CBX3 1 dataset
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 178 bp overlap
CTCF 100 datasets
ChIP 22Rv1 ENCFF466OXN 187 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 187 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 160 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 125 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 132 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 99 bp overlap
ChIP C4-2B ENCFF821XVN 187 bp overlap
ChIP C4-2B ENCFF821XVN 187 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 126 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 128 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF531QOI 187 bp overlap
ChIP GM23338 ENCFF772DML 101 bp overlap
ChIP H1 ENCFF230QSV 159 bp overlap
ChIP H1 ENCFF414GZI 184 bp overlap
ChIP H1 ENCFF764RHO 187 bp overlap
ChIP H54 ENCFF255TVO 177 bp overlap
ChIP H9 ENCFF152GTF 187 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 187 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 171 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 187 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 187 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 187 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 187 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 187 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 187 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 160 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 187 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 187 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 113 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 187 bp overlap
ChIP HCT116 ENCFF003KHP 187 bp overlap
ChIP HCT116 ENCFF209YMI 187 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 69 bp overlap
ChIP HEK293 ENCFF498RMM 187 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 138 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 113 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 161 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 187 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 187 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 187 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 166 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 160 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 162 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 156 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 186 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 108 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 94 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 115 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 103 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 187 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 183 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 112 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 187 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 158 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 187 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 178 bp overlap
ChIP MCF-7 ENCFF162GNE 187 bp overlap
ChIP MCF-7 ENCFF198DQX 187 bp overlap
ChIP MCF-7 ENCFF414SZG 183 bp overlap
ChIP MCF-7 ENCFF494VXA 187 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 174 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 182 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 110 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 155 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 141 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 113 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 174 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 187 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 181 bp overlap
ChIP PC-3 ENCFF487TUI 187 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 187 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 187 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 187 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 184 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 144 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 122 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 156 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 133 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 158 bp overlap
ChIP endodermal cell ENCFF471YCZ 187 bp overlap
ChIP endodermal cell ENCFF471YCZ 95 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 187 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 187 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 182 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 159 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 166 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 158 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 164 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 157 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 177 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 156 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 185 bp overlap
ChIP neural progenitor cell ENCFF420RBO 112 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 187 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 159 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 163 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 154 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 162 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 171 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 112 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HLF 1 dataset
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 83 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 187 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 145 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 134 bp overlap
NEUROD1 1 dataset
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 14 datasets
ChIP H1 ENCFF698EWO 187 bp overlap
ChIP H1 ENCFF967OJF 187 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 125 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 187 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 187 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 175 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 147 bp overlap
ChIP HCT116 ENCFF568PEO 187 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 147 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 154 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 175 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 114 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 187 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 166 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 102 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 187 bp overlap
SMC1A 2 datasets
ChIP A-549 GSE76893.SMC1A.A-549 145 bp overlap
ChIP MCF-7 GSE76893.SMC1A.MCF-7 186 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 137 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 137 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 137 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 175 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 187 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 127 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 185 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 185 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 132 bp overlap
SUZ12 1 dataset
ChIP ProEs GSE59087.SUZ12.ProEs 62 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 126 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
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