chr9 : 13,589,422 13,589,642
220 bp 29 TFs 0 linked genes
This 220 bp open chromatin element has no linked target genes and is bound by 29 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:13,584,422 – 13,594,642
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BRD4 1 dataset
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 83 bp overlap
DPF2 1 dataset
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 170 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 71 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 214 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 220 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 220 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 220 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 220 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 220 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 124 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 220 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 220 bp overlap
ChIP H1 ENCFF747ZPQ 208 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 220 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 220 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 167 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 220 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 220 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 220 bp overlap
ChIP hESC GSE18292.NANOG.hESC 178 bp overlap
ChIP hESC GSE20650.NANOG.hESC 219 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 76 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 134 bp overlap
POU5F1 7 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 220 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 220 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 216 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 173 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 220 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 220 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 162 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
SMARCA4 3 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 184 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 180 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 220 bp overlap
SOX13 1 dataset
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
SOX2 2 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 220 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap