chr1 : 114,287,494 114,287,999
505 bp 32 TFs 2 linked genes
This 505 bp open chromatin element is linked to TRIM33 and BCAS2 and is bound by 32 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TRIM33 223.5 kb Distal Multiome
BCAS2 293.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:114,282,494 – 114,292,999
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
Bcl11B 1 dataset
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 149 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 217 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 219 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 304 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Dmrt1 1 dataset
Motif DE_72h DE_72h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 434 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 146 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 237 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 229 bp overlap
ChIP DE DE-FOXA2-1 505 bp overlap
ChIP DE DE-FOXA2-2 505 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 505 bp overlap
ChIP DE DE-GATA4-2 505 bp overlap
ChIP foregut GSE117136.GATA4.foregut 464 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 505 bp overlap
ChIP DE DE-GATA6-2 505 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 279 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 505 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 292 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 457 bp overlap
ChIP foregut GSE117136.GATA6.foregut 422 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 311 bp overlap
GLI3 2 datasets
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
Motif DE_72h DE_72h-GLI3_MA1491.3 15 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 183 bp overlap
LHX6 1 dataset
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 435 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 345 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 268 bp overlap
PBX1 1 dataset
Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 210 bp overlap
RUNX3 1 dataset
Motif DE_48h DE_48h-RUNX3_MA0684.3 8 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 505 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 479 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 324 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 403 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 486 bp overlap
SRY 1 dataset
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 351 bp overlap
ZNF143 1 dataset
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 120 bp overlap
ZNF354A 1 dataset
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 165 bp overlap