chr6 : 28,468,726 – 28,469,991
1,265 bp 36 TFs 8 linked genes
This 1.3 kb open chromatin element is linked to 8 target genes and is bound by 36 transcription factors.
Linked Genes
8 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZSCAN23 25.8 kb Distal Multiome
ZSCAN12 69.5 kb Distal Multiome
SCAND3 118.0 kb Distal Multiome
ZKSCAN3 119.3 kb Distal Multiome
PGBD1 187.7 kb Distal Multiome
ZSCAN26 201.9 kb Distal Multiome
ZKSCAN4 217.0 kb Distal Multiome
ZSCAN9 244.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:28,463,726 – 28,474,991
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
36 transcription factors
Source
Cell type
ARNT::HIF1A 1 dataset
Motif ES_0h ES_0h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
CTCF 1 dataset
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 235 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 234 bp overlap
EGR2 1 dataset
Motif ES_0h ES_0h-EGR2_MA0472.2 11 bp overlap
EGR3 1 dataset
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif ES_0h ES_0h-EGR4_MA0733.2 11 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2_phosphoT487 2 datasets
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 180 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 233 bp overlap
FEZF2 1 dataset
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
MEIS1 2 datasets
Motif DE_24h DE_24h-MEIS1_MA1639.2 9 bp overlap
Motif ES_0h ES_0h-MEIS1_MA1639.2 9 bp overlap
NFYB 5 datasets
ChIP GM12878 ENCFF474DNH 381 bp overlap
ChIP GM12878 ENCFF474DNH 381 bp overlap
ChIP HepG2 ENCFF174VYX 405 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 188 bp overlap
ChIP K562 ENCFF709RXX 130 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Nkx2-1 1 dataset
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 282 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 280 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 213 bp overlap
ChIP GM23338 ENCFF450WCS 491 bp overlap
ChIP GM23338 ENCFF450WCS 491 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 569 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 635 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 300 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 305 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 54 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 318 bp overlap
ChIP K562 ENCFF875HLX 375 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
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