Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for ZSCAN12. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = ZSCAN12 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of ZSCAN12, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr6:28,104,510–28,105,291 | 294.9 kb | Distal (>10kb) Multiome | 927 | |
| chr6:28,136,684–28,137,470 | 262.7 kb | Distal (>10kb) Multiome | 1035 | |
| chr6:28,141,479–28,142,195 | 257.9 kb | Distal (>10kb) Multiome | 1010 | |
| chr6:28,171,036–28,171,660 | 228.3 kb | Distal (>10kb) Multiome | 67 | |
| chr6:28,225,159–28,225,667 | 174.4 kb | Distal (>10kb) Multiome | 914 | |
| chr6:28,281,346–28,282,033 | 118.2 kb | Distal (>10kb) Multiome | 751 | |
| chr6:28,335,073–28,336,704 | 64.0 kb | Distal (>10kb) Multiome | 1036 | |
| chr6:28,349,817–28,350,289 | 49.7 kb | Distal (>10kb) Multiome | 884 | |
| chr6:28,356,177–28,356,613 | 43.4 kb | Distal (>10kb) Multiome | 569 | |
| chr6:28,383,266–28,383,869 | 16.2 kb | Distal (>10kb) Multiome | 821 | |
| chr6:28,399,292–28,400,183 | 59 bp | At TSS Multiome | 978 | |
| chr6:28,443,132–28,443,643 | 43.7 kb | Distal (>10kb) Multiome | 481 | |
| chr6:28,468,726–28,469,991 | 69.5 kb | Distal (>10kb) Multiome | 36 | |
| chr6:28,542,393–28,543,473 | 143.1 kb | Distal (>10kb) Multiome | 775 | |
| chr6:28,587,026–28,587,675 | 187.6 kb | Distal (>10kb) Multiome | 777 | |
| chr6:28,589,233–28,589,816 | 189.8 kb | Distal (>10kb) Multiome | 684 | |
| chr6:28,657,863–28,658,336 | 258.4 kb | Distal (>10kb) Multiome | 477 | |
| chr6:28,682,403–28,683,572 | 283.1 kb | Distal (>10kb) Multiome HiCAR | 119 |
Genomic view of the ZSCAN12 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.