chr6 : 27,882,616 27,883,103
487 bp 38 TFs 1 linked gene
This 487 bp open chromatin element is linked to H4C13 and is bound by 38 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
H4C13 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:27,877,616 – 27,888,103
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 69 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 106 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 261 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 305 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 129 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 272 bp overlap
ERF 1 dataset
Motif DE_36h DE_36h-ERF_MA0760.2 9 bp overlap
ESR1 6 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 220 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 122 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 292 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 204 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 111 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 288 bp overlap
ETV1 1 dataset
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 223 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 249 bp overlap
ChIP DE DE-GATA4-2 399 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 249 bp overlap
ChIP DE DE-GATA6-2 331 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 472 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 381 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 372 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 323 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 295 bp overlap
GFI1 1 dataset
Motif DE_36h DE_36h-GFI1_MA0038.3 11 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 487 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 433 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 487 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 487 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 487 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 477 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 437 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 381 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 421 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 421 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 223 bp overlap
MAFF 1 dataset
Motif DE_36h DE_36h-MAFF_MA0495.4 11 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 127 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 245 bp overlap
ChIP WTC11 ENCFF223QFY 429 bp overlap
Mafb 1 dataset
Motif DE_36h DE_36h-Mafb_MA0117.3 11 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 307 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 241 bp overlap
NRL 1 dataset
Motif DE_36h DE_36h-NRL_MA0842.3 12 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 487 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 217 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 487 bp overlap
RFX1 2 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 270 bp overlap
ChIP K562 ENCFF421AVO 311 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 220 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 349 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 420 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 429 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 487 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 414 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 487 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 351 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 422 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 280 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 286 bp overlap
SPIB 1 dataset
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Spz1 1 dataset
Motif DE_36h DE_36h-Spz1_MA0111.1 11 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 244 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 173 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 120 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 268 bp overlap
ChIP K562 ENCFF875HLX 80 bp overlap
ZNF136 1 dataset
Motif DE_36h DE_36h-ZNF136_MA1588.1 15 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap