chr5 : 178,565,213 178,565,920
707 bp 25 TFs 4 linked genes
This 707 bp open chromatin element is linked to 4 target genes and is bound by 25 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
COL23A1 12.0 kb Distal Multiome
CLK4 61.5 kb Distal Multiome
ZNF354A 165.1 kb Distal Multiome
ZNF354B 294.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:178,560,213 – 178,570,920
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 235 bp overlap
CTCF 5 datasets
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 74 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 251 bp overlap
ChIP K-562_15923 GSE131349.CTCF.K-562_15923 118 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 120 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 335 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 215 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 111 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 501 bp overlap
ChIP DE DE-FOXA2-2 291 bp overlap
GATA1 3 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 178 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 222 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 707 bp overlap
ChIP DE DE-GATA4-2 707 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 584 bp overlap
ChIP foregut GSE117136.GATA4.foregut 381 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 449 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 263 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 255 bp overlap
ChIP DE DE-GATA6-1 707 bp overlap
ChIP DE DE-GATA6-2 707 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 364 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 389 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 707 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 509 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 687 bp overlap
ChIP foregut GSE117136.GATA6.foregut 392 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 345 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 587 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 375 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 250 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 400 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 292 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 393 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 329 bp overlap
MAFK 1 dataset
ChIP A549 ENCFF371EPR 81 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 227 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 210 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 65 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 273 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 348 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 290 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 209 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 293 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 707 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 707 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 139 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 173 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 707 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 85 bp overlap