chr5 : 177,394,330 177,394,649
319 bp 21 TFs 1 linked gene
This 319 bp open chromatin element is linked to F12 and is bound by 21 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
F12 9.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:177,389,330 – 177,399,649
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 148 bp overlap
CTCF 1 dataset
ChIP endodermal cell ENCFF471YCZ 319 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 263 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 187 bp overlap
ESRRA 5 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 224 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 222 bp overlap
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 158 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 138 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 234 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 319 bp overlap
ChIP DE DE-FOXA2-2 319 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 214 bp overlap
ChIP DE DE-GATA4-2 283 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 319 bp overlap
ChIP DE DE-GATA6-2 319 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 126 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 298 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 296 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 147 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 319 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 319 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 260 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 319 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 319 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 319 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 280 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 144 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 67 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCFF436CGE 237 bp overlap