chr1 : 99,951,388 99,951,903
515 bp 18 TFs 8 linked genes
This 515 bp open chromatin element is linked to 8 target genes and is bound by 18 transcription factors.
Linked Genes
8 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000228084 18.3 kb Distal Multiome
SLC35A3 18.3 kb Distal Multiome
MFSD14A 86.4 kb Distal Multiome
AGL 101.3 kb Distal Multiome
SASS6 181.3 kb Distal Multiome
TRMT13 181.5 kb Distal Multiome
FRRS1 185.0 kb Distal Multiome
DBT 298.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:99,946,388 – 99,956,903
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 136 bp overlap
ChIP H-1_DE GSE126661.BRD3.H-1_DE 247 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 145 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 302 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 224 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 267 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 438 bp overlap
ChIP DE DE-GATA4-2 481 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 458 bp overlap
ChIP DE DE-GATA6-2 402 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 363 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 456 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 331 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 365 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 328 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 515 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 378 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 265 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 515 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 515 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 158 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 268 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 236 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 242 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 246 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 80 bp overlap