chr5 : 25,181,067 25,181,736
669 bp 19 TFs 1 linked gene
This 669 bp open chromatin element is linked to LINC02228 and is bound by 19 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02228 9.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:25,176,067 – 25,186,736
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 219 bp overlap
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 78 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 271 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 104 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 298 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 425 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 430 bp overlap
CTCF 4 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 510 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 248 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 429 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 383 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 316 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 323 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 319 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 368 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 330 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 281 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 349 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 292 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 106 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 219 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 239 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 190 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 355 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 390 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 420 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 435 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-DMSO GSE128673.TP53.Calu-1_MUT8-DMSO 274 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 192 bp overlap