chr5 : 3,179,329 3,179,540
211 bp 16 TFs 1 linked gene
This 211 bp open chromatin element is linked to LINC01377 and is bound by 16 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01377 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:3,174,329 – 3,184,540
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 114 bp overlap
BRD4 2 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 110 bp overlap
ChIP hESC GSE33281.BRD4.hESC 78 bp overlap
CTCF 64 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 206 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 116 bp overlap
ChIP DND-41 ENCFF913MRA 211 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 124 bp overlap
ChIP GM23338 ENCFF531QOI 141 bp overlap
ChIP GM23338 ENCFF772DML 142 bp overlap
ChIP H1 ENCFF230QSV 162 bp overlap
ChIP H1 ENCFF414GZI 171 bp overlap
ChIP H1 ENCFF764RHO 82 bp overlap
ChIP H9 ENCFF152GTF 211 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 211 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 134 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 141 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 151 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 101 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 147 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 161 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 133 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 147 bp overlap
ChIP K562 ENCFF082GOI 159 bp overlap
ChIP MCF-7 ENCFF139NQI 193 bp overlap
ChIP MCF-7 ENCFF162GNE 183 bp overlap
ChIP MCF-7 ENCFF198DQX 180 bp overlap
ChIP MCF-7 ENCFF414SZG 165 bp overlap
ChIP MCF-7 ENCFF424NQR 167 bp overlap
ChIP MCF-7 ENCFF494VXA 180 bp overlap
ChIP MCF-7 ENCFF844STM 167 bp overlap
ChIP MCF-7 ENCFF954TUV 156 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 144 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 155 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 130 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 115 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 157 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 168 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 178 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 197 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 170 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 158 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 153 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 190 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 125 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 211 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 197 bp overlap
ChIP endodermal cell ENCFF471YCZ 211 bp overlap
ChIP hESC GSE20650.CTCF.hESC 119 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 168 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 211 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 203 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 143 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 166 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 132 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 174 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 199 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 167 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 189 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 162 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 176 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 186 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 176 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 193 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 167 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 160 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 154 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 211 bp overlap
ESR1 1 dataset
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 172 bp overlap
EZH2 4 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 207 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 211 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 191 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 211 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 150 bp overlap
RAD21 19 datasets
ChIP H1 ENCFF698EWO 144 bp overlap
ChIP H1 ENCFF967OJF 196 bp overlap
ChIP HepG2 ENCFF906QIS 175 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 125 bp overlap
ChIP K562 ENCFF169SQI 154 bp overlap
ChIP MCF-7 ENCFF724VCQ 195 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 129 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 137 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 121 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 123 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 193 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 157 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 211 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 211 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 138 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 161 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 191 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 145 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 153 bp overlap
RNF2 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 85 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 118 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 211 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 170 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 185 bp overlap
SUZ12 1 dataset
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 211 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 100 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 211 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 209 bp overlap