chr4 : 154,745,729 154,745,948
219 bp 20 TFs 1 linked gene
This 219 bp open chromatin element is linked to LRAT and is bound by 20 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LRAT 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:154,740,729 – 154,750,948
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 191 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 155 bp overlap
EZH2 5 datasets
ChIP SF8628 GSE94834.EZH2.SF8628 219 bp overlap
ChIP hepatocyte ENCFF552DZB 219 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 183 bp overlap
ChIP neural progenitor cell ENCFF018MKA 219 bp overlap
ChIP neural progenitor cell ENCFF018MKA 219 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 55 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 219 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 219 bp overlap
ChIP foregut GSE117136.GATA4.foregut 219 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 219 bp overlap
ChIP DE DE-GATA6-2 207 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 219 bp overlap
ChIP foregut GSE117136.GATA6.foregut 219 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 176 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 115 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 211 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 166 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 219 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 219 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 219 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 93 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 193 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 219 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 219 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 182 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 128 bp overlap
RNF2 3 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 219 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 209 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 219 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 102 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 110 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 219 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 219 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 219 bp overlap