chr4 : 140,939,445 – 140,939,665
220 bp 24 TFs 0 linked genes
This 220 bp open chromatin element has no linked target genes and is bound by 24 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:140,934,445 – 140,944,665
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 220 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 174 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 220 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 220 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 220 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 180 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 207 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 121 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 183 bp overlap
EZH2 1 dataset
ChIP hepatocyte ENCFF118DKH 220 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 172 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 220 bp overlap
ChIP DE DE-FOXA2-2 220 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 172 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 220 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 220 bp overlap
ChIP DE DE-GATA4-2 220 bp overlap
ChIP foregut GSE117136.GATA4.foregut 220 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 220 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 183 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 220 bp overlap
ChIP DE DE-GATA6-2 220 bp overlap
ChIP foregut GSE117136.GATA6.foregut 220 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 220 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 220 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 220 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 103 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 220 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 220 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 220 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 102 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 220 bp overlap
PKNOX1 3 datasets
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 117 bp overlap
ChIP HEK293T ENCFF174WDB 162 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 122 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 220 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 220 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 220 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 151 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 154 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 220 bp overlap
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 220 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 121 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 129 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 127 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 220 bp overlap
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