chr4 : 126,237,863 – 126,238,313
450 bp 31 TFs 0 linked genes
This 450 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:126,232,863 – 126,243,313
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 145 bp overlap
CTCF 41 datasets
ChIP BE2C ENCFF757SRF 278 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 199 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_60h DE_60h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 78 bp overlap
ChIP H1 ENCFF764RHO 268 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 237 bp overlap
ChIP K-562 GSE110681.CTCF.K-562 127 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 228 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 184 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 192 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 207 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 180 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 204 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 153 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 135 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 247 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 127 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 209 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 338 bp overlap
ChIP heart left ventricle ENCFF769GAB 450 bp overlap
ChIP heart left ventricle ENCFF987PUT 263 bp overlap
ChIP heart right ventricle ENCFF435TKW 332 bp overlap
ChIP heart right ventricle ENCFF979TCT 368 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 229 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 185 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 186 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 158 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 189 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 156 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 228 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 381 bp overlap
ChIP neural progenitor cell ENCFF420RBO 352 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 215 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 166 bp overlap
ChIP right atrium auricular region ENCFF696NTN 374 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 253 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 275 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 215 bp overlap
DMRTA2 2 datasets
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 108 bp overlap
Ebf2 1 dataset
Motif DE_60h DE_60h-Ebf2_MA1604.2 9 bp overlap
FOSL2 1 dataset
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 139 bp overlap
ChIP DE DE-FOXA2-2 232 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 200 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-2 286 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 159 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 297 bp overlap
GATA5 2 datasets
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 450 bp overlap
ChIP DE DE-GATA6-2 274 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Gata3 2 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 166 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 325 bp overlap
Mecom 2 datasets
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
PHOX2A 2 datasets
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 229 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_60h DE_60h-POU2F1SOX2_MA1962.1 17 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 217 bp overlap
ChIP H1 ENCFF967OJF 240 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 125 bp overlap
ChIP HCT116 ENCFF568PEO 253 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 133 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 147 bp overlap
ChIP SK-N-SH ENCFF747MAS 239 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 182 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 195 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 160 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 191 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 175 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 193 bp overlap
RBPJ 1 dataset
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
SIX1 3 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
Motif DE_60h DE_60h-SIX1_MA1118.2 9 bp overlap
SIX2 6 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 447 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 207 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 223 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 81 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 171 bp overlap
Six4 3 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
Motif DE_60h DE_60h-Six4_MA2001.2 7 bp overlap
TRPS1 2 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZNF547 1 dataset
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
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