chr4 : 52,660,663 52,661,052
389 bp 23 TFs 2 linked genes
This 389 bp open chromatin element is linked to USP46-DT and USP46 and is bound by 23 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
USP46-DT 1.3 kb Proximal Proximity
USP46 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:52,655,663 – 52,666,052
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 214 bp overlap
BRD4 1 dataset
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 236 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 300 bp overlap
ChIP K562 ENCFF673OEZ 197 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 121 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 103 bp overlap
FOXA1 11 datasets
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 165 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 298 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 168 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 273 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 255 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 60 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 141 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 205 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 295 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 280 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 309 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 362 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 297 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 354 bp overlap
ChIP DE DE-FOXA2-1 389 bp overlap
ChIP DE DE-FOXA2-2 389 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 248 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 151 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 389 bp overlap
ChIP DE DE-GATA4-2 389 bp overlap
ChIP foregut GSE117136.GATA4.foregut 389 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 389 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 389 bp overlap
ChIP DE DE-GATA6-2 389 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 332 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 389 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 333 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 353 bp overlap
ChIP foregut GSE117136.GATA6.foregut 284 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 389 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 255 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 262 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 290 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 336 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 377 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 192 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 365 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 259 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 325 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 191 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 129 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 177 bp overlap