chr3 : 164,550,952 – 164,551,164
212 bp 46 TFs 0 linked genes
This 212 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:164,545,952 – 164,556,164
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 77 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 132 bp overlap
CTCF 117 datasets
ChIP 22Rv1 ENCFF466OXN 212 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 212 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 212 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 174 bp overlap
ChIP A549 ENCFF034FVO 212 bp overlap
ChIP C4-2B ENCFF821XVN 212 bp overlap
ChIP C4-2B ENCFF821XVN 109 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 107 bp overlap
ChIP Calu3 ENCFF526MDS 212 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 152 bp overlap
ChIP GM23338 ENCFF531QOI 167 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GM23338 ENCFF832KWE 212 bp overlap
ChIP H1 ENCFF764RHO 70 bp overlap
ChIP H9 ENCFF152GTF 212 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 132 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 212 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 158 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 191 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 193 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 162 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 212 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 153 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 212 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 148 bp overlap
ChIP HCT116 ENCFF003KHP 212 bp overlap
ChIP HCT116 ENCFF209YMI 212 bp overlap
ChIP HEC-1-B GSE139679.CTCF.HEC-1-B 156 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 105 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 88 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 121 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 72 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 212 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 149 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 141 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 94 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 167 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 191 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 153 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 100 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 112 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 103 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 175 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 201 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 120 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 138 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 132 bp overlap
ChIP LNCAP ENCFF223HIG 212 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 212 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 212 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 212 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 172 bp overlap
ChIP MCF-7 ENCFF139NQI 212 bp overlap
ChIP MCF-7 ENCFF162GNE 208 bp overlap
ChIP MCF-7 ENCFF198DQX 211 bp overlap
ChIP MCF-7 ENCFF210JUZ 212 bp overlap
ChIP MCF-7 ENCFF494VXA 211 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 212 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 212 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 200 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 212 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 158 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 168 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 131 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 108 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 126 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 179 bp overlap
ChIP Peyers-patch ENCSR391ZKN.CTCF.Peyers-patch 168 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 162 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 196 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 212 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 167 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 212 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 202 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 142 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 150 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 200 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 162 bp overlap
ChIP astrocyte ENCFF558APA 212 bp overlap
ChIP brain ENCFF685VRG 212 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 212 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 212 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 212 bp overlap
ChIP endodermal cell ENCFF471YCZ 212 bp overlap
ChIP endothelial cell ENCFF663LIE 212 bp overlap
ChIP endothelial cell ENCFF663LIE 169 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 117 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 212 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 190 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 212 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 212 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 165 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 185 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 212 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 175 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 155 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 184 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 155 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 167 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 199 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 212 bp overlap
ChIP neural crest cell ENCFF182LWK 212 bp overlap
ChIP neural progenitor cell ENCFF420RBO 190 bp overlap
ChIP neural progenitor cell ENCFF581WPG 212 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 212 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 144 bp overlap
ChIP osteocyte ENCFF929FPD 212 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 212 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 196 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 142 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 184 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 212 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 212 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 212 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ESR1 9 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 185 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 172 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 190 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 209 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 202 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 162 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 184 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 167 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 167 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
FOXA1 1 dataset
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 83 bp overlap
FOXA2 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 106 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Nkx2-1 1 dataset
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 212 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF698EWO 212 bp overlap
ChIP H1 ENCFF967OJF 211 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 192 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 125 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 194 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 190 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 144 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 155 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 169 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 169 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 171 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SRY 1 dataset
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 177 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 177 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 127 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
TEAD4 1 dataset
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 212 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF410 1 dataset
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF524 1 dataset
Motif DE_12h DE_12h-ZNF524_MA2096.1 9 bp overlap
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