chr3 : 154,017,948 – 154,018,059
111 bp 32 TFs 0 linked genes
This 111 bp open chromatin element has no linked target genes and is bound by 32 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:154,012,948 – 154,023,059
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
CTCF 77 datasets
ChIP 22Rv1 ENCFF466OXN 111 bp overlap
ChIP 22Rv1 ENCFF466OXN 111 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 111 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 102 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 111 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 67 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 76 bp overlap
ChIP B cell ENCFF500PZO 92 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 111 bp overlap
ChIP C4-2B ENCFF821XVN 111 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 80 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 111 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 111 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 111 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 111 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 111 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 65 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 111 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 84 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 85 bp overlap
ChIP GSC23 GSE139416.CTCF.GSC23 111 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 59 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 111 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 111 bp overlap
ChIP HCT-116 GSE92879.CTCF.HCT-116 89 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 103 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 66 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 111 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 111 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 55 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 61 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 63 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 111 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 111 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 97 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 111 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 70 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 72 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 111 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 62 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 111 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 111 bp overlap
ChIP Panc1 ENCFF056JQX 111 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 111 bp overlap
ChIP RWPE1 ENCFF200GQF 52 bp overlap
ChIP RWPE2 ENCFF911IEE 111 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 71 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 98 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 111 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 73 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 101 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 67 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 111 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 111 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 111 bp overlap
ChIP brain ENCFF163BBN 108 bp overlap
ChIP brain ENCFF685VRG 83 bp overlap
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 81 bp overlap
ChIP coronary artery ENCFF383OZM 67 bp overlap
ChIP endothelial cell ENCFF663LIE 87 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 111 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 105 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 101 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 101 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 51 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 101 bp overlap
ChIP heart right ventricle ENCFF979TCT 64 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 93 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 57 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 100 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 111 bp overlap
ChIP natural killer cell ENCFF517SNI 74 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 68 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 111 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 111 bp overlap
ChIP stomach ENCFF918GTC 63 bp overlap
ChIP transverse colon ENCFF749DPF 56 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 111 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 97 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 111 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 111 bp overlap
ChIP DE DE-FOXA2-2 102 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 53 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 111 bp overlap
GATA4 4 datasets
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 111 bp overlap
ChIP foregut GSE117136.GATA4.foregut 111 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 111 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 111 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 111 bp overlap
ChIP DE DE-GATA6-2 111 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP foregut GSE117136.GATA6.foregut 111 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 111 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 111 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 111 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 53 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 51 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 111 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
RAD21 5 datasets
ChIP GP5D GSE51234.RAD21.GP5D 111 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 111 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 56 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 77 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 63 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 51 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 111 bp overlap
TEF 1 dataset
Motif DE_12h DE_12h-TEF_MA0843.2 10 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 111 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
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