chr1 : 63,229,375 63,229,577
202 bp 27 TFs 0 linked genes
This 202 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:63,224,375 – 63,234,577
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 202 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 202 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 137 bp overlap
CTCF 95 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 202 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 138 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 202 bp overlap
ChIP A673 ENCFF123WOM 202 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 185 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 150 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 136 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 181 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 167 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 103 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 188 bp overlap
ChIP GM23338 ENCFF531QOI 149 bp overlap
ChIP GM23338 ENCFF772DML 165 bp overlap
ChIP H1 ENCFF414GZI 202 bp overlap
ChIP H1 ENCFF764RHO 202 bp overlap
ChIP H9 ENCFF152GTF 202 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 202 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 202 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 202 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 197 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 202 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 202 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 202 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 202 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 202 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 202 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 120 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 107 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 202 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 193 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 193 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 174 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 202 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 194 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 141 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 118 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 151 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 133 bp overlap
ChIP HepG2 ENCFF348BUL 185 bp overlap
ChIP HepG2 ENCFF757EKU 202 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 202 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 149 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 155 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 115 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 158 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 146 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 136 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 102 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 134 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 202 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 129 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 177 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 168 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 182 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 179 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 166 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 172 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 167 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 170 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 202 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 202 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 202 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 202 bp overlap
ChIP Panc1 ENCFF056JQX 202 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 148 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 117 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 137 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 189 bp overlap
ChIP endodermal cell ENCFF471YCZ 202 bp overlap
ChIP endodermal cell ENCFF471YCZ 112 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 162 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 200 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 202 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 183 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 202 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 160 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 165 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 202 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 158 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 189 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 168 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 187 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 202 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 202 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 170 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 163 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 158 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 202 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 147 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 202 bp overlap
ChIP thyroid gland ENCFF300RYK 202 bp overlap
ChIP thyroid gland ENCFF631QRY 202 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 197 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 202 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 202 bp overlap
CTCFL 2 datasets
ChIP FT282 GSE131931.CTCFL.FT282 186 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 182 bp overlap
HDAC6 1 dataset
ChIP WA01 ENCSR000ATQ.HDAC6.WA01 107 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 156 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 161 bp overlap
MITF 7 datasets
ChIP 501-mel GSE137522.MITF.501-mel 202 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 134 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 184 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 180 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 174 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 162 bp overlap
ChIP K562 ENCFF731XJJ 181 bp overlap
PAX5 5 datasets
ChIP GM12878 ENCFF482PUW 202 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 111 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 141 bp overlap
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 124 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 127 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 176 bp overlap
RAD21 23 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 151 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 184 bp overlap
ChIP H1 ENCFF698EWO 83 bp overlap
ChIP H1 ENCFF967OJF 105 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 202 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 202 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 192 bp overlap
ChIP HepG2 ENCFF906QIS 202 bp overlap
ChIP Ishikawa ENCFF570JVV 202 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 200 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 134 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 173 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 202 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 202 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 202 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 130 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 183 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 155 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 151 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 164 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 202 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 191 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 202 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 113 bp overlap
SMC1 2 datasets
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 202 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 157 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 164 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 131 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 182 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 182 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 167 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 120 bp overlap
TOE1 1 dataset
ChIP MCF-7 ENCFF544WQF 88 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 94 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 108 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 195 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 130 bp overlap
ZBTB2 2 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 121 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 118 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 168 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 96 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 139 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 202 bp overlap