chr3 : 35,465,068 35,465,559
491 bp 34 TFs 0 linked genes
This 491 bp open chromatin element has no linked target genes and is bound by 34 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:35,460,068 – 35,470,559
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
BCL6 1 dataset
Motif DE_60h DE_60h-BCL6_MA0463.3 13 bp overlap
BHLHE22 2 datasets
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
CEBPA 1 dataset
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 263 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 262 bp overlap
EBF1 1 dataset
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 248 bp overlap
Ebf4 1 dataset
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 432 bp overlap
ChIP DE DE-FOXA2-2 386 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 387 bp overlap
ChIP DE DE-GATA4-2 458 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 425 bp overlap
ChIP DE DE-GATA6-2 491 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 395 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
Neurod2 2 datasets
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Olig2 2 datasets
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 239 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 176 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 237 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 491 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 285 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 234 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 260 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 229 bp overlap
TBX19 1 dataset
Motif DE_60h DE_60h-TBX19_MA0804.2 17 bp overlap
TBXT 1 dataset
Motif DE_60h DE_60h-TBXT_MA0009.2 16 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
Tcf12 2 datasets
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
Wt1 1 dataset
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
ZNF680 1 dataset
Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap
Zfp809 2 datasets
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap