chr1 : 53,715,913 – 53,716,142
229 bp 20 TFs 0 linked genes
This 229 bp open chromatin element has no linked target genes and is bound by 20 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:53,710,913 – 53,721,142
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 229 bp overlap
CREB1 1 dataset
ChIP WTC11 ENCFF297VCI 229 bp overlap
CTCF 74 datasets
ChIP 22Rv1 ENCFF466OXN 117 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 131 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 64 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 151 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 77 bp overlap
ChIP C4-2B ENCFF821XVN 87 bp overlap
ChIP C4-2B ENCFF821XVN 105 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 170 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 116 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 94 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 131 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 229 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 188 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 185 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 229 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 165 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 115 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 90 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 229 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 125 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 160 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 74 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 71 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 147 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 190 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 73 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 194 bp overlap
ChIP KMS-11 ENCFF853JKX 56 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 168 bp overlap
ChIP MCF-7 ENCFF210JUZ 146 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 84 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 96 bp overlap
ChIP NCI-H929 ENCFF305JAB 192 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 134 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 146 bp overlap
ChIP Panc1 ENCFF056JQX 121 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 98 bp overlap
ChIP RWPE2 ENCFF911IEE 72 bp overlap
ChIP RWPE2 ENCFF911IEE 77 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 162 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 110 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 66 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 99 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 132 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 73 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 128 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 59 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 73 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 131 bp overlap
ChIP adrenal gland ENCFF678WUB 111 bp overlap
ChIP body of pancreas ENCFF269EDN 138 bp overlap
ChIP brain ENCFF163BBN 220 bp overlap
ChIP brain ENCFF685VRG 228 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 162 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 139 bp overlap
ChIP endothelial cell ENCFF663LIE 57 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 64 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 163 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 66 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 61 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 65 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 229 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 70 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 229 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 187 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 229 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 194 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 229 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 134 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 86 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 72 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 65 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 172 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 189 bp overlap
HMGXB4 1 dataset
ChIP HepG2 ENCFF179TAD 54 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 173 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 74 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 229 bp overlap
RAD21 6 datasets
ChIP GP5D GSE51234.RAD21.GP5D 50 bp overlap
ChIP GP5D_SIRAD21 GSE51234.RAD21.GP5D_SIRAD21 121 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 169 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 150 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 125 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 155 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 196 bp overlap
RBM39 2 datasets
ChIP HepG2 ENCFF084YZE 81 bp overlap
ChIP HepG2 ENCFF801JUH 79 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 147 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 229 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 229 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 229 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 229 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 229 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 229 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 125 bp overlap
SMARCA5 1 dataset
ChIP K562 ENCFF936KHY 114 bp overlap
SMC1 3 datasets
ChIP HCAEC GSE101921.SMC1.HCAEC 92 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 80 bp overlap
ChIP IMR-90_OIS GSE118494.SMC1.IMR-90_OIS 175 bp overlap
ZKSCAN1 1 dataset
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 117 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 229 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 186 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 110 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 53 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 66 bp overlap
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