chr1 : 46,788,642 46,789,579
937 bp 28 TFs 3 linked genes
This 937 bp open chromatin element is linked to EFCAB14, ATPAF1, and MKNK1 and is bound by 28 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
EFCAB14 69.9 kb Distal Multiome
ATPAF1 120.6 kb Distal Multiome
MKNK1 172.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:46,783,642 – 46,794,579
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
AR 19 datasets
ChIP LNCaP GSE85558.AR.LNCaP 158 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 174 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 139 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 206 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 137 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 178 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 148 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 271 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 369 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 390 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 521 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 201 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 121 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 216 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 247 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 395 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 238 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 247 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 326 bp overlap
CBFA2T2 1 dataset
ChIP K562 ENCFF963TXY 381 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 260 bp overlap
ChIP K562 ENCFF673OEZ 234 bp overlap
FOXA1 10 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 332 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 178 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 333 bp overlap
ChIP HepG2 ENCFF207NVJ 198 bp overlap
ChIP HepG2 ENCFF361KNY 244 bp overlap
ChIP HepG2 ENCFF740VZW 193 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 155 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 195 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 200 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 221 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 165 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 329 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 133 bp overlap
ChIP DE DE-FOXA2-1 918 bp overlap
ChIP DE DE-FOXA2-2 879 bp overlap
ChIP HepG2 ENCFF533COJ 129 bp overlap
ChIP HepG2 ENCFF570ABM 282 bp overlap
ChIP HepG2 ENCFF894AYY 166 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 285 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 912 bp overlap
ChIP DE DE-GATA4-2 937 bp overlap
ChIP foregut GSE117136.GATA4.foregut 732 bp overlap
ChIP foregut GSE117136.GATA4.foregut 68 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 852 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 303 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 883 bp overlap
ChIP DE DE-GATA6-2 937 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 910 bp overlap
ChIP foregut GSE117136.GATA6.foregut 748 bp overlap
ChIP foregut GSE117136.GATA6.foregut 83 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 261 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 185 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 301 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 210 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 82 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 111 bp overlap
PGR 4 datasets
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 254 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 181 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 163 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 235 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 315 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 227 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 319 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 64 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 340 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 237 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 873 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 158 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 505 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 819 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 304 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 380 bp overlap
TAL1 1 dataset
ChIP K562 ENCFF620GMX 385 bp overlap
TCF3 1 dataset
ChIP K562 ENCFF319QZT 381 bp overlap
TP63 5 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 87 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 103 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 325 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 99 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 179 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 471 bp overlap