chr2 : 165,474,744 165,474,908
164 bp 24 TFs 1 linked gene
This 164 bp open chromatin element is linked to CSRNP3 and is bound by 24 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CSRNP3 5.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:165,469,744 – 165,479,908
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 140 bp overlap
CTCF 3 datasets
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 157 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 145 bp overlap
ChIP endodermal cell ENCFF471YCZ 164 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 62 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 84 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 122 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 164 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 113 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 152 bp overlap
NR2C1 1 dataset
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR5A1 1 dataset
Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap
Nr1H2 1 dataset
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 164 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 107 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 164 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 124 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 164 bp overlap
RORA 2 datasets
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
Motif ES_0h ES_0h-RORA_MA0072.2 11 bp overlap
RORB 1 dataset
Motif ES_0h ES_0h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif ES_0h ES_0h-RORC_MA1151.2 10 bp overlap
SMARCA4 2 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 83 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 148 bp overlap
Six3 2 datasets
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
Motif ES_0h ES_0h-Six3_MA0631.2 11 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 148 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 96 bp overlap