chr2 : 69,839,612 69,840,203
591 bp 24 TFs 1 linked gene
This 591 bp open chromatin element is linked to GMCL1 and is bound by 24 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GMCL1 10.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:69,834,612 – 69,845,203
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 88 bp overlap
CEBPB 2 datasets
ChIP K-562 ENCSR000EHE.CEBPB.K-562 89 bp overlap
ChIP K562 ENCFF189VBN 103 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 164 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 167 bp overlap
ChIP K562 ENCFF956TPS 240 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 216 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 261 bp overlap
FOXA1 12 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 219 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 231 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 406 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 229 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 183 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 313 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 189 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 158 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 143 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 162 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 303 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 174 bp overlap
FOXA2 9 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 305 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 279 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 224 bp overlap
ChIP DE DE-FOXA2-1 534 bp overlap
ChIP DE DE-FOXA2-2 521 bp overlap
ChIP HepG2 ENCFF570ABM 119 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 240 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 285 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 292 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 235 bp overlap
GATA1 4 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 192 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 288 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 240 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 227 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 197 bp overlap
GATA3 4 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 219 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 280 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 128 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 270 bp overlap
GATA4 10 datasets
ChIP A-549 GSE85002.GATA4.A-549 171 bp overlap
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 327 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 262 bp overlap
ChIP DE DE-GATA4-1 591 bp overlap
ChIP DE DE-GATA4-2 591 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 187 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 189 bp overlap
ChIP foregut GSE117136.GATA4.foregut 391 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 378 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 368 bp overlap
GATA6 13 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 245 bp overlap
ChIP DE DE-GATA6-1 568 bp overlap
ChIP DE DE-GATA6-2 591 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 344 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 360 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 427 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 591 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 491 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 428 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 260 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 445 bp overlap
ChIP foregut GSE117136.GATA6.foregut 396 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 338 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 78 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 165 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 143 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 141 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 433 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 393 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 288 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 238 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 213 bp overlap
TRPS1 2 datasets
ChIP MCF-7 GSE133072.TRPS1.MCF-7 204 bp overlap
ChIP T-47D GSE107013.TRPS1.T-47D 140 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 393 bp overlap