chrX : 43,948,021 43,948,336
315 bp 23 TFs 1 linked gene
This 315 bp open chromatin element is linked to NDP-AS1 and is bound by 23 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NDP-AS1 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:43,943,021 – 43,953,336
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 128 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 66 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 254 bp overlap
CDK8 1 dataset
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 65 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 181 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 315 bp overlap
ESR1 15 datasets
ChIP MCF-7 GSE128445.ESR1.MCF-7 232 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 61 bp overlap
ChIP MCF-7_H3B-5942 GSE115607.ESR1.MCF-7_H3B-5942 182 bp overlap
ChIP MCF-7_H3B-6545 GSE115607.ESR1.MCF-7_H3B-6545 188 bp overlap
ChIP MCF-7_Sat-H3B-6545 GSE115607.ESR1.MCF-7_Sat-H3B-6545 217 bp overlap
ChIP MCF-7_Tamoxifen GSE115607.ESR1.MCF-7_Tamoxifen 315 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 221 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 167 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 197 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 245 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 243 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 199 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 315 bp overlap
ChIP T-47D_CR3flp GSE99479.ESR1.T-47D_CR3flp 129 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 151 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 315 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 260 bp overlap
ChIP DE DE-FOXA2-2 272 bp overlap
GATA2 5 datasets
ChIP ESF GSE108408.GATA2.ESF 111 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 131 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 131 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 264 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 142 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 122 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 300 bp overlap
ChIP DE DE-GATA4-2 315 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 269 bp overlap
ChIP DE DE-GATA6-2 286 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 251 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 267 bp overlap
MED12 1 dataset
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 117 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 245 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 220 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 120 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 264 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 315 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 315 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 213 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 284 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 221 bp overlap