chr18 : 56,002,904 56,003,602
698 bp 24 TFs 2 linked genes
This 698 bp open chromatin element is linked to LINC03092 and LINC01416 and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC03092 4.6 kb Proximal Proximity
LINC01416 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:55,997,904 – 56,008,602
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 184 bp overlap
BRD4 2 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 189 bp overlap
ChIP CHL-1 GSE95585.BRD4.CHL-1 242 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 95 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 265 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 698 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 85 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 106 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 107 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 101 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 324 bp overlap
ChIP DE DE-GATA4-2 420 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 342 bp overlap
ChIP DE DE-GATA6-2 397 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 319 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 95 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 318 bp overlap
RBPJ 3 datasets
ChIP GIC GSE79734.RBPJ.GIC 166 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 678 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 323 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 508 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 283 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 471 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 228 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 194 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 78 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 278 bp overlap