chr1 : 242,475,341 – 242,475,572
231 bp 16 TFs 0 linked genes
This 231 bp open chromatin element has no linked target genes and is bound by 16 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:242,470,341 – 242,480,572
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 187 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 155 bp overlap
CTCF 122 datasets
ChIP 22Rv1 ENCFF466OXN 231 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 231 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 231 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 200 bp overlap
ChIP A-549 ENCSR000BHW.CTCF.A-549 163 bp overlap
ChIP A-549 ENCSR000DYD.CTCF.A-549 172 bp overlap
ChIP A-549 ENCSR000BHV.CTCF.A-549 114 bp overlap
ChIP A549 ENCFF034FVO 231 bp overlap
ChIP A549 ENCFF434LUY 200 bp overlap
ChIP A549 ENCFF669BWC 231 bp overlap
ChIP BE2C ENCFF757SRF 231 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 135 bp overlap
ChIP C4-2B ENCFF821XVN 231 bp overlap
ChIP C4-2B ENCFF821XVN 130 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 152 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 128 bp overlap
ChIP GM23338 ENCFF531QOI 111 bp overlap
ChIP H1 ENCFF764RHO 231 bp overlap
ChIP H9 ENCFF152GTF 215 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 206 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 158 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 160 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 143 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 145 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 148 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 194 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 209 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 163 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 222 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 200 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 109 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 84 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 118 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 116 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 146 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 175 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 175 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 150 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 229 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 226 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 208 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 176 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 132 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 178 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 149 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 140 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 129 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 107 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 135 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 114 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 140 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 81 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 120 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 124 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 215 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 137 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 180 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 130 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 163 bp overlap
ChIP LNCAP ENCFF223HIG 231 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 205 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 231 bp overlap
ChIP MCF-7 ENCFF162GNE 213 bp overlap
ChIP MCF-7 ENCFF198DQX 204 bp overlap
ChIP MCF-7 ENCFF210JUZ 169 bp overlap
ChIP MCF-7 ENCFF494VXA 204 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 231 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 200 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 188 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 186 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 168 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 112 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 97 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 231 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 231 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 231 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 231 bp overlap
ChIP MCF-7L_t4 GSE108787.CTCF.MCF-7L_t4 231 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 119 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 111 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 105 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 141 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 192 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 75 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 174 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 175 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 231 bp overlap
ChIP Panc1 ENCFF056JQX 231 bp overlap
ChIP Panc1 ENCFF056JQX 230 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 133 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 146 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 225 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 141 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 231 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 224 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 199 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 209 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 211 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 130 bp overlap
ChIP VCaP ENCFF858YQT 231 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 231 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 210 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 106 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 200 bp overlap
ChIP endodermal cell ENCFF471YCZ 132 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 149 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 128 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 231 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 112 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 141 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 205 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 153 bp overlap
ChIP neural crest cell ENCFF182LWK 231 bp overlap
ChIP neural progenitor cell ENCFF420RBO 231 bp overlap
ChIP neural progenitor cell ENCFF581WPG 231 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 170 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 180 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 150 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 118 bp overlap
CTCFL 5 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 176 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 147 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 160 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 214 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 231 bp overlap
E2F1 3 datasets
ChIP MCF-7 ENCFF692OYJ 231 bp overlap
ChIP MCF-7 ENCFF692OYJ 231 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 184 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 207 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 208 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 214 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 213 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 227 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 215 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 212 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 220 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 202 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 203 bp overlap
HOXB13 5 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 207 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 146 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 119 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 118 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 118 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 230 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 173 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 168 bp overlap
RAD21 5 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 161 bp overlap
ChIP A549 ENCFF047SFC 205 bp overlap
ChIP MCF-7 ENCFF724VCQ 231 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 184 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 167 bp overlap
SMARCC1 1 dataset
ChIP MCF-7 GSE124225.SMARCC1.MCF-7 113 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 181 bp overlap
SMC1A 3 datasets
ChIP A-549 GSE76893.SMC1A.A-549 198 bp overlap
ChIP MCF-7 GSE76893.SMC1A.MCF-7 212 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 145 bp overlap
SMC3 4 datasets
ChIP A549 ENCFF079FKB 231 bp overlap
ChIP HeLa-Kyoto_ESCO1-depleted GSE138405.SMC3.HeLa-Kyoto_ESCO1-depleted 176 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 159 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 185 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 199 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 194 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 112 bp overlap
ZNF384 5 datasets
ChIP HEK293T ENCFF019DZX 201 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 231 bp overlap
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 176 bp overlap
ChIP K-562 ENCSR000EFP.ZNF384.K-562 161 bp overlap
ChIP K562 ENCFF365NXQ 231 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 84 bp overlap
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