chr12 : 53,086,948 53,087,165
217 bp 20 TFs 1 linked gene
This 217 bp open chromatin element is linked to SPRYD3 and is bound by 20 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SPRYD3 7.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:53,081,948 – 53,092,165
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 101 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 101 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 217 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 202 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 217 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 217 bp overlap
CTCF 4 datasets
ChIP HeLa GSE126990.CTCF.HeLa 89 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 89 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 217 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 217 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 68 bp overlap
FOXA1 1 dataset
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 122 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 217 bp overlap
ChIP DE DE-FOXA2-2 217 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 217 bp overlap
ChIP DE DE-GATA4-2 217 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 217 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 217 bp overlap
ChIP DE DE-GATA6-2 217 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 217 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 158 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 217 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 159 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 215 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 217 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 163 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 177 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 217 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 217 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 217 bp overlap
SPI1 1 dataset
ChIP NB4 GSE128834.SPI1.NB4 194 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 143 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 168 bp overlap
ZNF41 1 dataset
ChIP HEK293 GSE76494.ZNF41.HEK293 149 bp overlap