chr12 : 16,796,288 16,796,687
399 bp 49 TFs 0 linked genes
This 399 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:16,791,288 – 16,801,687
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 343 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EPAS1 1 dataset
Motif DE_12h DE_12h-EPAS1_MA2325.1 9 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 185 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 7 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 356 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 247 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 124 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 399 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 300 bp overlap
ChIP hESC GSE20650.NANOG.hESC 186 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 330 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 227 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 206 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 215 bp overlap
SOX13 1 dataset
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
SOX2 3 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 399 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 257 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
TP53 14 datasets
ChIP H9 GSE142050.TP53.H9 399 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 399 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 376 bp overlap
ChIP HCT-116_5FU GSE58506.TP53.HCT-116_5FU 217 bp overlap
ChIP HCT-116_nutlin GSE86164.TP53.HCT-116_nutlin 390 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 369 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 399 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 399 bp overlap
ChIP MOLM-13_R282W_DMSO GSE131484.TP53.MOLM-13_R282W_DMSO 295 bp overlap
ChIP MOLM-13_R282W_Daunorubicin GSE131484.TP53.MOLM-13_R282W_Daunorubicin 253 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 341 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 286 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 399 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 301 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 399 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 257 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 176 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 399 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 327 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 140 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 127 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap