chr1 : 202,638,017 202,638,513
496 bp 19 TFs 7 linked genes
This 496 bp open chromatin element is linked to 7 target genes and is bound by 19 transcription factors.
Linked Genes
7 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SYT2 4.9 kb Proximal Proximity
KDM5B 170.1 kb Distal Multiome
PCAT6 172.5 kb Distal Multiome
RABIF 250.8 kb Distal Multiome
KLHL12 288.9 kb Distal Multiome
PPP1R12B 289.7 kb Distal Multiome
UBE2T 296.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:202,633,017 – 202,643,513
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 102 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 384 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 182 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 342 bp overlap
ChIP DE DE-FOXA2-2 142 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 113 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 366 bp overlap
ChIP DE DE-GATA4-2 496 bp overlap
ChIP foregut GSE117136.GATA4.foregut 281 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 382 bp overlap
ChIP DE DE-GATA6-2 496 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 330 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 296 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 334 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 457 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 249 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 291 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 379 bp overlap
ChIP foregut GSE117136.GATA6.foregut 271 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 396 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 60 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 302 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 93 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 391 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 167 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 457 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 439 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 457 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 214 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 171 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 218 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 428 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 446 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 496 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 241 bp overlap