chr11 : 41,449,328 41,449,770
442 bp 20 TFs 1 linked gene
This 442 bp open chromatin element is linked to LRRC4C and is bound by 20 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LRRC4C 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:41,444,328 – 41,454,770
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
AR 19 datasets
ChIP LNCaP GSE110655.AR.LNCaP 240 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 174 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 382 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 158 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 201 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 174 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 133 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 115 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 225 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 262 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 286 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 254 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 241 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 187 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 108 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 115 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 169 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 132 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 248 bp overlap
BRD4 3 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 129 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 219 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 442 bp overlap
CTCF 1 dataset
ChIP endodermal cell ENCFF471YCZ 311 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 189 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 173 bp overlap
ETV1 1 dataset
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 97 bp overlap
FOXA1 4 datasets
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 263 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 107 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 185 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 233 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 388 bp overlap
ChIP DE DE-FOXA2-2 309 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 230 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 230 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 307 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 235 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 202 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 339 bp overlap
ChIP DE DE-GATA4-2 425 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 428 bp overlap
ChIP DE DE-GATA6-2 403 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 284 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 360 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 308 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 221 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 442 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 324 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 403 bp overlap
Irf1 1 dataset
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Lhx1 1 dataset
Motif DE_60h DE_60h-Lhx1_MA1518.3 10 bp overlap
PAX4 1 dataset
Motif DE_60h DE_60h-PAX4_MA0068.2 8 bp overlap
STAT3 2 datasets
ChIP BT-474 GSE152203.STAT3.BT-474 182 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 373 bp overlap
Spz1 1 dataset
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
ZNF135 1 dataset
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZNF701 1 dataset
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap