chr1 : 163,312,429 163,312,953
524 bp 17 TFs 3 linked genes
This 524 bp open chromatin element is linked to RGS5, ENSG00000232995, and NUF2 and is bound by 17 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
RGS5 8.8 kb Proximal Proximity
ENSG00000232995 8.8 kb Proximal Proximity
NUF2 9.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:163,307,429 – 163,317,953
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 213 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 167 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 503 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 151 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 524 bp overlap
ChIP DE DE-FOXA2-2 507 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 159 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 159 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 120 bp overlap
GATA3 2 datasets
ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 166 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 456 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 524 bp overlap
ChIP DE DE-GATA4-2 524 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 524 bp overlap
ChIP DE DE-GATA6-2 524 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 524 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 291 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 440 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 403 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 210 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 487 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 471 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 351 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 236 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 471 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 467 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 161 bp overlap