chr7 : 140,481,148 140,482,022
874 bp 15 TFs 5 linked genes
This 874 bp open chromatin element is linked to 5 target genes and is bound by 15 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
MKRN1 2.6 kb Proximal Proximity
SLC37A3 83.1 kb Distal Multiome
DENND2A 159.2 kb Distal Multiome+HiCAR
ADCK2 192.2 kb Distal Multiome
NDUFB2 215.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:140,476,148 – 140,487,022
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 133 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 155 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 361 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 804 bp overlap
ChIP DE DE-FOXA2-2 820 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 562 bp overlap
ChIP DE DE-GATA4-2 812 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 839 bp overlap
ChIP DE DE-GATA6-2 743 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 385 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 330 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 207 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 227 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 315 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 413 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 601 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 668 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 539 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 426 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 874 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 251 bp overlap