chr6 : 39,073,107 39,073,666
559 bp 17 TFs 2 linked genes
This 559 bp open chromatin element is linked to SAYSD1 and KCNK5 and is bound by 17 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SAYSD1 41.7 kb Distal Multiome
KCNK5 156.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:39,068,107 – 39,078,666
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
CTCF 4 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 65 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP endodermal cell ENCFF471YCZ 256 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 214 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 125 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 186 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 217 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 132 bp overlap
EZH2 3 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 394 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 203 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 91 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 486 bp overlap
ChIP DE DE-GATA4-2 480 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 486 bp overlap
ChIP DE DE-GATA6-2 496 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 259 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 355 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 73 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 91 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 160 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 356 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 419 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 123 bp overlap
ZNF506 1 dataset
ChIP HEK293T GSE78099.ZNF506.HEK293T 115 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 202 bp overlap