chr5 : 54,876,310 54,877,298
988 bp 23 TFs 1 linked gene
This 988 bp open chromatin element is linked to ENSG00000289060 and is bound by 23 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000289060 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:54,871,310 – 54,882,298
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 133 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 496 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 481 bp overlap
ChIP DE DE-FOXA2-2 481 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 413 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-2 471 bp overlap
ChIP foregut GSE117136.GATA4.foregut 434 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 771 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 590 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 471 bp overlap
ChIP DE DE-GATA6-2 765 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 739 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 973 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 892 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 312 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 791 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 762 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 313 bp overlap
ChIP foregut GSE117136.GATA6.foregut 535 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 609 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 573 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 608 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 193 bp overlap
KDM1A 3 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 263 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 581 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 289 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 230 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 123 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 193 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 384 bp overlap
ChIP H9 ERP004206.ONECUT1.H9 105 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 149 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 693 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 264 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 177 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 537 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 120 bp overlap
ChIP stomach ENCFF820WZN 160 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 419 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 383 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 147 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 306 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 790 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 570 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 607 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 929 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 625 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 370 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 301 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 361 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 334 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 122 bp overlap