chr4 : 55,676,969 55,678,075
1,106 bp 12 TFs 6 linked genes
This 1.1 kb open chromatin element is linked to 6 target genes and is bound by 12 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
NMU 41.0 kb Distal Multiome
PDCL2 85.1 kb Distal Multiome
CLOCK 130.4 kb Distal Multiome
EXOC1 176.3 kb Distal Multiome
CEP135 271.5 kb Distal Multiome
TMEM165 281.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:55,671,969 – 55,683,075
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 1106 bp overlap
ChIP DE DE-FOXA2-2 1032 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 1106 bp overlap
ChIP DE DE-GATA4-2 1106 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 1106 bp overlap
ChIP DE DE-GATA6-2 1001 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 487 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 658 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1010 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 311 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 708 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_60h DE_60h-MEIS2_MA1640.2 9 bp overlap
PBX2 1 dataset
Motif DE_60h DE_60h-PBX2_MA1113.3 9 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1075 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 975 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 1048 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 1066 bp overlap
ZNF507 1 dataset
ChIP K562 ENCFF577IRE 591 bp overlap