chr4 : 3,927,408 3,928,004
596 bp 19 TFs 5 linked genes
This 596 bp open chromatin element is linked to 5 target genes and is bound by 19 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
EVA1CP2 3.1 kb Proximal Proximity
ALG1L7P 7.4 kb Proximal Proximity
FAM86EP 27.8 kb Distal Multiome
ADRA2C 161.3 kb Distal Multiome
ENSG00000290888 179.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:3,922,408 – 3,933,004
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 314 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 596 bp overlap
ChIP DE DE-FOXA2-2 596 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 460 bp overlap
ChIP DE DE-GATA4-2 498 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 359 bp overlap
ChIP DE DE-GATA6-1 184 bp overlap
ChIP DE DE-GATA6-2 497 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 273 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 491 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 596 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 554 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 388 bp overlap
NANOG 1 dataset
ChIP GM23338 ENCFF065NZG 289 bp overlap
NR2F1 1 dataset
Motif DE_72h DE_72h-NR2F1_MA0017.3 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 254 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 278 bp overlap
RXRG 1 dataset
Motif DE_72h DE_72h-RXRG_MA1556.1 14 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 334 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 535 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 458 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 329 bp overlap
SMAD3 1 dataset
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 139 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 294 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 390 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 349 bp overlap
Wt1 1 dataset
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF740 1 dataset
Motif DE_72h DE_72h-ZNF740_MA0753.3 10 bp overlap