chr3 : 148,820,139 – 148,820,519
380 bp 22 TFs 1 linked gene
This 380 bp open chromatin element is linked to CPB1 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CPB1 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:148,815,139 – 148,825,519
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 59 bp overlap
ARID1A 4 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 183 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 380 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 171 bp overlap
ChIP MCF-7_JQ1 GSE123284.ARID1A.MCF-7_JQ1 125 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 119 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 68 bp overlap
ESR1 18 datasets
ChIP MCF-7 GSE41561.ESR1.MCF-7 59 bp overlap
ChIP MCF-7_800 GSE115607.ESR1.MCF-7_800 70 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 55 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 60 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 136 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 57 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 70 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 79 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 112 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 114 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 135 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 187 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 50 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 218 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 81 bp overlap
ChIP MCF-7_shKMT2C_R GSE100328.ESR1.MCF-7_shKMT2C_R 110 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 68 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 98 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 100 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 62 bp overlap
FOXA1 61 datasets
ChIP LNCaP GSE64656.FOXA1.LNCaP 147 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 196 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 74 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 176 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 161 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 154 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 121 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 105 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 104 bp overlap
ChIP MCF-7 GSE95302.FOXA1.MCF-7 101 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 85 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 82 bp overlap
ChIP MCF-7 GSE124667.FOXA1.MCF-7 62 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 59 bp overlap
ChIP MCF-7_1118 GSE124667.FOXA1.MCF-7_1118 58 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 60 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.FOXA1.MCF-7_ARID1A-KO 100 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 162 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 208 bp overlap
ChIP MCF-7_DSG GSE114737.FOXA1.MCF-7_DSG 87 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 140 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 130 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 88 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 93 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 72 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 101 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 117 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 71 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 148 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 145 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 136 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 64 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 78 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 209 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 81 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 99 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 237 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 380 bp overlap
ChIP MCF-7_shNR2F2 GSE132432.FOXA1.MCF-7_shNR2F2 249 bp overlap
ChIP MCF-7_siFEN1 GSE95302.FOXA1.MCF-7_siFEN1 79 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 240 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 325 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 95 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 56 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 98 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 126 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 179 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 144 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 179 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 127 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 108 bp overlap
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 133 bp overlap
ChIP breast-cancer_heregulin-ICI GSE101407.FOXA1.breast-cancer_heregulin-ICI 128 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 119 bp overlap
ChIP breast_tumor_Female_3 GSE104399.FOXA1.breast_tumor_Female_3 65 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 325 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 88 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 89 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 155 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 106 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 98 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 55 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 105 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 326 bp overlap
ChIP hESC GSE18292.NANOG.hESC 59 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 131 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 71 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 322 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 273 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 178 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 107 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 70 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 298 bp overlap
ChIP A-549_AG15690 GSE132290.SMARCA4.A-549_AG15690 195 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 274 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 142 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 129 bp overlap
SMARCB1 5 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 231 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 111 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 178 bp overlap
ChIP MCF-7_JQ1 GSE123284.SMARCB1.MCF-7_JQ1 246 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 144 bp overlap
STAT3 8 datasets
ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 185 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 98 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 193 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 130 bp overlap
ChIP MCF-7_jc5842 GSE126004.STAT3.MCF-7_jc5842 168 bp overlap
ChIP MCF-7_jc5844 GSE126004.STAT3.MCF-7_jc5844 55 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 89 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 65 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 69 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 217 bp overlap
YY1AP1 1 dataset
ChIP MCF-7_Veh GSE125594.YY1AP1.MCF-7_Veh 103 bp overlap
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