chr3 : 132,026,752 132,027,372
620 bp 13 TFs 1 linked gene
This 620 bp open chromatin element is linked to CPNE4 and is bound by 13 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CPNE4 7.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:132,021,752 – 132,032,372
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
CLOCK 1 dataset
ChIP BA10_1 GSE96659.CLOCK.BA10_1 147 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 386 bp overlap
GATA1 2 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 99 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 154 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 547 bp overlap
ChIP DE DE-GATA4-2 374 bp overlap
ChIP DE DE-GATA4-2 164 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 276 bp overlap
ChIP DE DE-GATA6-2 307 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 189 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 547 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 295 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 546 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 561 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 371 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 575 bp overlap
HOXB13 2 datasets
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 212 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 160 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 221 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 174 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 210 bp overlap
SPI1 3 datasets
ChIP DC_LPS GSE123347.SPI1.DC_LPS 105 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 162 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 190 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 251 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 105 bp overlap