chr3 : 109,056,060 109,056,879
819 bp 22 TFs 0 linked genes
This 819 bp open chromatin element has no linked target genes and is bound by 22 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:109,051,060 – 109,061,879
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 133 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 149 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 242 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 274 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 345 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 166 bp overlap
ESR1 2 datasets
Motif DE_48h DE_48h-ESR1_MA0112.4 15 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 124 bp overlap
FOXA1 1 dataset
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 165 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 430 bp overlap
ChIP DE DE-FOXA2-2 422 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 390 bp overlap
ChIP DE DE-GATA4-2 365 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 277 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 346 bp overlap
ChIP DE DE-GATA6-2 388 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 329 bp overlap
Mecom 1 dataset
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
NR2C2 1 dataset
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
PPARG 1 dataset
Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 339 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 261 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 269 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 565 bp overlap
SPI1 4 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 113 bp overlap
ChIP HL-60 ENCFF645GBT 149 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 80 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 76 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 87 bp overlap
THRA 1 dataset
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 202 bp overlap