chr3 : 108,221,555 108,221,682
127 bp 20 TFs 1 linked gene
This 127 bp open chromatin element is linked to IFT57 and is bound by 20 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
IFT57 752 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:108,216,555 – 108,226,682
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 113 bp overlap
BRD4 1 dataset
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 127 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 86 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 97 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 127 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 88 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 127 bp overlap
ChIP K562 ENCFF055GAZ 127 bp overlap
ChIP K562 ENCFF317JJX 127 bp overlap
HOXB13 2 datasets
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 95 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 66 bp overlap
KMT2A 3 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 127 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 127 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 127 bp overlap
MEN1 2 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 127 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 127 bp overlap
MYOG 1 dataset
ChIP RH4 GSE83726.MYOG.RH4 78 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 69 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 127 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 127 bp overlap
SMARCA4 6 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 127 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 127 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 127 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 73 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 127 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 127 bp overlap
SMARCB1 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.SMARCB1.RMG-I_ARID1A-KO 127 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 78 bp overlap
TBX5 2 datasets
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 100 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 100 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 127 bp overlap
ZNF343 1 dataset
ChIP HepG2 ENCFF003KCM 127 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 117 bp overlap