chr3 : 97,018,633 – 97,019,046
413 bp 21 TFs 0 linked genes
This 413 bp open chromatin element has no linked target genes and is bound by 21 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:97,013,633 – 97,024,046
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
CTCF 81 datasets
ChIP 22Rv1 ENCFF466OXN 413 bp overlap
ChIP 22Rv1 ENCFF466OXN 269 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 139 bp overlap
ChIP A549 ENCFF034FVO 289 bp overlap
ChIP A549 ENCFF182TCQ 206 bp overlap
ChIP A549 ENCFF669BWC 388 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG04450 ENCFF116DJL 214 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 117 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM12864 ENCFF357DQE 231 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 107 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 104 bp overlap
ChIP GM12872 ENCFF697BYI 238 bp overlap
ChIP GM23338 ENCFF772DML 90 bp overlap
ChIP H1 ENCFF414GZI 207 bp overlap
ChIP H1 ENCFF764RHO 88 bp overlap
ChIP H54 ENCFF255TVO 112 bp overlap
ChIP H9 ENCFF152GTF 289 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 317 bp overlap
ChIP IMR-90 ENCFF887MRH 225 bp overlap
ChIP K562 ENCFF430KTH 327 bp overlap
ChIP MCF 10A ENCFF988BGF 336 bp overlap
ChIP MCF-7 ENCFF139NQI 233 bp overlap
ChIP MCF-7 ENCFF162GNE 235 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF210JUZ 311 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 208 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP NCI-H929 ENCFF305JAB 411 bp overlap
ChIP Panc1 ENCFF056JQX 374 bp overlap
ChIP RWPE2 ENCFF911IEE 396 bp overlap
ChIP RWPE2 ENCFF911IEE 396 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 159 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 211 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 146 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 347 bp overlap
ChIP adrenal gland ENCFF257AUK 395 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 179 bp overlap
ChIP brain ENCFF163BBN 413 bp overlap
ChIP brain ENCFF163BBN 249 bp overlap
ChIP brain ENCFF685VRG 367 bp overlap
ChIP brain ENCFF685VRG 166 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 231 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 286 bp overlap
ChIP chondrocyte ENCFF134ORZ 407 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 311 bp overlap
ChIP endodermal cell ENCFF471YCZ 243 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 234 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 272 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 149 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 146 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 148 bp overlap
ChIP fibroblast of lung ENCFF356FDN 295 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 213 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 230 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 413 bp overlap
ChIP heart left ventricle ENCFF663LEI 321 bp overlap
ChIP hepatocyte ENCFF263BLJ 204 bp overlap
ChIP keratinocyte ENCFF046PBT 104 bp overlap
ChIP keratinocyte ENCFF291YDC 98 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 150 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 297 bp overlap
ChIP nephron ENCFF589HXU 413 bp overlap
ChIP nephron ENCFF589HXU 220 bp overlap
ChIP nephron ENCFF972IQB 301 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 378 bp overlap
ChIP neural crest cell ENCFF182LWK 293 bp overlap
ChIP neural crest cell ENCFF182LWK 192 bp overlap
ChIP neural progenitor cell ENCFF420RBO 231 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 149 bp overlap
ChIP osteocyte ENCFF929FPD 240 bp overlap
ChIP placenta ENCFF029PHY 325 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 196 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 232 bp overlap
ChIP right lobe of liver ENCFF011NDG 321 bp overlap
ChIP smooth muscle cell ENCFF656FBT 230 bp overlap
ChIP thyroid gland ENCFF163TUI 370 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 297 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
NR1D1 2 datasets
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
Motif ES_0h ES_0h-NR1D1_MA1531.2 14 bp overlap
NR1D2 2 datasets
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
Motif ES_0h ES_0h-NR1D2_MA1532.2 15 bp overlap
Nfat5 2 datasets
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 112 bp overlap
ChIP H1 ENCFF967OJF 92 bp overlap
ChIP K562 ENCFF169SQI 171 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RFX7 2 datasets
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCFF627LON 237 bp overlap
Thap11 1 dataset
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF282 2 datasets
Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap
Motif ES_0h ES_0h-ZNF282_MA1154.2 15 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF669 2 datasets
Motif DE_12h DE_12h-ZNF669_MA1985.1 15 bp overlap
Motif ES_0h ES_0h-ZNF669_MA1985.1 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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