chr3 : 88,508,792 88,509,145
353 bp 15 TFs 0 linked genes
This 353 bp open chromatin element has no linked target genes and is bound by 15 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:88,503,792 – 88,514,145
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 75 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 235 bp overlap
FOXA1 1 dataset
ChIP MCF-7 ENCFF465LTH 182 bp overlap
GATA3 1 dataset
ChIP MCF-7 ENCFF352QVM 280 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 155 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 99 bp overlap
ChIP MCF-7 ENCFF116OCS 149 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 156 bp overlap
RAD21 1 dataset
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 183 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 92 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 202 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 202 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 139 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 162 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 155 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 78 bp overlap
ZFHX2 2 datasets
ChIP HEK293 ENCFF167TUA 280 bp overlap
ChIP HEK293 ENCFF167TUA 333 bp overlap
ZHX2 1 dataset
ChIP MCF-7 ENCSR876UYH.ZHX2.MCF-7 51 bp overlap
ZNF217 2 datasets
ChIP MCF-7 ENCFF379OSU 217 bp overlap
ChIP MCF-7 ENCFF379OSU 353 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 353 bp overlap