chr3 : 69,731,000 69,731,368
368 bp 20 TFs 1 linked gene
This 368 bp open chromatin element is linked to MITF and is bound by 20 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
MITF 8.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:69,726,000 – 69,736,368
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 169 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 351 bp overlap
ChIP DE DE-FOXA2-2 368 bp overlap
GATA1 2 datasets
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 201 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 156 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 368 bp overlap
ChIP DE DE-GATA4-2 368 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 353 bp overlap
ChIP foregut GSE117136.GATA4.foregut 368 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 368 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 368 bp overlap
ChIP DE DE-GATA6-2 368 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 368 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 368 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 314 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 368 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 368 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 368 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 368 bp overlap
ChIP foregut GSE117136.GATA6.foregut 368 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 368 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 368 bp overlap
GFI1B 2 datasets
ChIP K-562 ENCSR509GDT.GFI1B.K-562 184 bp overlap
ChIP K-562_Wnt GSE117944.GFI1B.K-562_Wnt 170 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 271 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 197 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 248 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 202 bp overlap
ChIP K562 ENCFF744ALD 197 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 295 bp overlap
KDM1A 10 datasets
ChIP K-562 GSE117944.KDM1A.K-562 294 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 271 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 270 bp overlap
ChIP K-562 ENCSR000ATX.KDM1A.K-562 194 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 235 bp overlap
ChIP K562 ENCFF128TYE 167 bp overlap
ChIP K562 ENCFF133OLU 183 bp overlap
ChIP K562 ENCFF934ZRG 335 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 186 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 58 bp overlap
PHF21A 2 datasets
ChIP K-562 ENCSR119VCX.PHF21A.K-562 183 bp overlap
ChIP K562 ENCFF088QME 245 bp overlap
RAD21 1 dataset
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 92 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 210 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 319 bp overlap
TAL1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 142 bp overlap
TP53 18 datasets
ChIP GM00011 GSE55727.TP53.GM00011 238 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 291 bp overlap
ChIP H9 GSE142050.TP53.H9 334 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 232 bp overlap
ChIP HCT-116_5FU GSE58506.TP53.HCT-116_5FU 231 bp overlap
ChIP HCT-116_nutlin GSE86164.TP53.HCT-116_nutlin 291 bp overlap
ChIP IMR-90_NUT3A GSE58740.TP53.IMR-90_NUT3A 165 bp overlap
ChIP K-562_Daunorubicin GSE131484.TP53.K-562_Daunorubicin 274 bp overlap
ChIP K-562_R282W_Daunorubicin GSE131484.TP53.K-562_R282W_Daunorubicin 295 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 198 bp overlap
ChIP MCF-7_2-5h_IR_10Gy GSE100099.TP53.MCF-7_2-5h_IR_10Gy 219 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 332 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 368 bp overlap
ChIP MOLM-13_R282W_DMSO GSE131484.TP53.MOLM-13_R282W_DMSO 293 bp overlap
ChIP MOLM-13_R282W_Daunorubicin GSE131484.TP53.MOLM-13_R282W_Daunorubicin 309 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 343 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 365 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 245 bp overlap
TP63 7 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 368 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 354 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 286 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 172 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 184 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 189 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 181 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 260 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 359 bp overlap