chr3 : 62,955,232 62,955,450
218 bp 21 TFs 1 linked gene
This 218 bp open chromatin element is linked to LINC00698 and is bound by 21 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00698 4.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:62,950,232 – 62,960,450
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
BRCA2 1 dataset
ChIP MCF-7 ENCFF531NNL 218 bp overlap
COPS2 1 dataset
ChIP MCF-7 ENCFF628TEZ 156 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 218 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 61 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 218 bp overlap
ChIP DE DE-FOXA2-2 218 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 218 bp overlap
ChIP DE DE-GATA4-2 218 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-2 218 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 218 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 218 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 218 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 218 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 218 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 218 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 218 bp overlap
IRF4 1 dataset
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 117 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 218 bp overlap
MED1 1 dataset
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 139 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 218 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 199 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 212 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 132 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 218 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 218 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 218 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 218 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 211 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 217 bp overlap