chr3 : 51,962,270 51,962,494
224 bp 17 TFs 2 linked genes
This 224 bp open chromatin element is linked to PCBP4 and ENSG00000280422 and is bound by 17 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PCBP4 5.0 kb Proximal Proximity
ENSG00000280422 8.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:51,957,270 – 51,967,494
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 122 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 205 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 217 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 224 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 224 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 224 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 198 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 224 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 206 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 119 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 184 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 131 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 136 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 134 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 165 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 224 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 224 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 224 bp overlap
NEUROD1 3 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 224 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 224 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 224 bp overlap
NR3C1 1 dataset
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 50 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 224 bp overlap
PGR 1 dataset
ChIP T-47D GSE31129.PGR.T-47D 55 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 224 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 224 bp overlap