chr1 : 52,396,940 52,397,252
312 bp 16 TFs 2 linked genes
This 312 bp open chromatin element is linked to ORC1 and PRPF38A and is bound by 16 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ORC1 7.2 kb Proximal Proximity
PRPF38A 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:52,391,940 – 52,402,252
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 160 bp overlap
CEBPB 1 dataset
ChIP MV4-11 GSE88746.CEBPB.MV4-11 161 bp overlap
CTCF 11 datasets
ChIP GM23338 ENCFF772DML 76 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 92 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 52 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 68 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 116 bp overlap
ChIP K562 ENCFF082GOI 62 bp overlap
ChIP Loucy ENCFF359TVQ 203 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 125 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 235 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 91 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 126 bp overlap
DNMT3B 2 datasets
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 196 bp overlap
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 178 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 312 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 168 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 206 bp overlap
JUNB 2 datasets
ChIP K-562 ENCSR000DJY.JUNB.K-562 138 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 312 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 167 bp overlap
POLR2A 2 datasets
ChIP K562 ENCFF137JSF 274 bp overlap
ChIP K562 ENCFF643HGX 262 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 191 bp overlap
ChIP HCT116 ENCFF568PEO 128 bp overlap
ChIP K562 ENCFF634XYR 225 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 57 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 68 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 258 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 267 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 312 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 220 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 159 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 159 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 77 bp overlap