Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

19 transcription factors

CRX 3 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 205 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 254 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 316 bp overlap

CTCF 8 datasets

ChIP HAP1 GSE152721.CTCF.HAP1 183 bp overlap

ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 241 bp overlap

ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 168 bp overlap

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 225 bp overlap

ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 166 bp overlap

ChIP endodermal cell ENCFF471YCZ 305 bp overlap

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 263 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 310 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 137 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 297 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 262 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 168 bp overlap

ChIP DE DE-GATA4-2 370 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-2 417 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 300 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 276 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 283 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 265 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 300 bp overlap

JUN 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 383 bp overlap

MEF2D 2 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 265 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 230 bp overlap

MYBL2 1 dataset

ChIP A-673 GSE119971.MYBL2.A-673 249 bp overlap

NEUROD1 5 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 264 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 286 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 301 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 267 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 258 bp overlap

OTX2 2 datasets

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 314 bp overlap

ChIP retina_pigment GSE60024.OTX2.retina_pigment 174 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 231 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 234 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 186 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 312 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 373 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 409 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 340 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 264 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 300 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 234 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 174 bp overlap

SMARCA4 2 datasets

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 223 bp overlap

ChIP G-401_Dox GSE71504.SMARCA4.G-401_Dox 268 bp overlap

SMARCC1 1 dataset

ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 205 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap

Genome Browser