chr1 : 42,336,866 42,337,409
543 bp 26 TFs 1 linked gene
This 543 bp open chromatin element is linked to FOXJ3 and is bound by 26 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
FOXJ3 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:42,331,866 – 42,342,409
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_Bag-1L_KO_Veh GSE89938.AR.LNCaP_Bag-1L_KO_Veh 106 bp overlap
ChIP breast_tumor_Male_28 GSE104399.AR.breast_tumor_Male_28 273 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 113 bp overlap
BRD4 4 datasets
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 427 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 386 bp overlap
ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 374 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 498 bp overlap
ESR1 6 datasets
ChIP ZR751 ERP000783.ESR1.ZR751 282 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 203 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 233 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 222 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 196 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 147 bp overlap
FOXA1 3 datasets
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 241 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 254 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 543 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 409 bp overlap
ChIP DE DE-FOXA2-2 259 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 182 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 138 bp overlap
GATA2 2 datasets
ChIP WA09 GSE105081.GATA2.WA09 226 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 274 bp overlap
GATA3 4 datasets
ChIP Kelly GSE94822.GATA3.Kelly 194 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 201 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 139 bp overlap
ChIP WA09 GSE105081.GATA3.WA09 178 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 508 bp overlap
ChIP DE DE-GATA4-2 543 bp overlap
ChIP foregut GSE117136.GATA4.foregut 394 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 321 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 474 bp overlap
ChIP DE DE-GATA6-2 524 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 455 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 460 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 405 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 320 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 492 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 465 bp overlap
ChIP foregut GSE117136.GATA6.foregut 429 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 311 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 281 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 312 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 171 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 333 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 72 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 275 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 305 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 340 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 379 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 299 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 273 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 231 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 541 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 336 bp overlap
TFAP2C 1 dataset
ChIP WA09 GSE105081.TFAP2C.WA09 302 bp overlap