chr2 : 153,584,336 – 153,584,546
210 bp 12 TFs 1 linked gene
This 210 bp open chromatin element is linked to ENSG00000227400 and is bound by 12 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000227400 8.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:153,579,336 – 153,589,546
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
CTCF 113 datasets
ChIP 22Rv1 ENCFF466OXN 210 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 210 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 191 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 210 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 147 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 189 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 120 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 119 bp overlap
ChIP GM12872 ENCFF697BYI 210 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 104 bp overlap
ChIP GM23338 ENCFF531QOI 210 bp overlap
ChIP GM23338 ENCFF772DML 71 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 202 bp overlap
ChIP H1 ENCFF764RHO 91 bp overlap
ChIP H9 ENCFF152GTF 210 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 210 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 210 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 181 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 192 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 210 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 210 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 206 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 186 bp overlap
ChIP HCT116 ENCFF209YMI 210 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 148 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 101 bp overlap
ChIP HEK293 ENCFF498RMM 201 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 204 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 106 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 146 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 198 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 210 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 210 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 171 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 210 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 131 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 139 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 210 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 210 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 138 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 141 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 138 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 132 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 134 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 118 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 108 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 103 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 210 bp overlap
ChIP KB_5Z GSE134435.CTCF.KB_5Z 121 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP MCF-10CA1a GSE98551.CTCF.MCF-10CA1a 210 bp overlap
ChIP MCF-7 ENCFF139NQI 210 bp overlap
ChIP MCF-7 ENCFF198DQX 209 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 209 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 197 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 210 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 210 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 210 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 163 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 152 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 135 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 152 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 208 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 167 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 210 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 131 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 144 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 189 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 206 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 210 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 210 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 175 bp overlap
ChIP PC-3 ENCFF487TUI 210 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 210 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 210 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 198 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 98 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 185 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 203 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 210 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 149 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 199 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 157 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 210 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 155 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 146 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 137 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 123 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 210 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 179 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 111 bp overlap
ChIP endodermal cell ENCFF471YCZ 159 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 210 bp overlap
ChIP hESC GSE20650.CTCF.hESC 108 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 155 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 118 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 161 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 133 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 210 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 140 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 137 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 160 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 210 bp overlap
ChIP islet ERP004003.CTCF.islet 210 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 178 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 150 bp overlap
ESR1 11 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 210 bp overlap
ChIP MCF-7 GSE119057.ESR1.MCF-7 210 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 210 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 210 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 210 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 197 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 210 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 200 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 203 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 205 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 204 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 187 bp overlap
ISL1 1 dataset
ChIP Huh-7 GSE77957.ISL1.Huh-7 186 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 135 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 106 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 66 bp overlap
RAD21 19 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 160 bp overlap
ChIP H1 ENCFF698EWO 120 bp overlap
ChIP H1 ENCFF967OJF 210 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 210 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 198 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 125 bp overlap
ChIP HCT116 ENCFF568PEO 210 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.RAD21.HEC-1-B_FFRR-insertion 63 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.RAD21.HEC-1-B_R1-insertion 88 bp overlap
ChIP HeLa-S3 ENCFF775CHI 210 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 142 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 125 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 210 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 189 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 210 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 208 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 210 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 189 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 210 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 184 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 144 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 144 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 144 bp overlap
STAG1 4 datasets
ChIP HeLa GSE126990.STAG1.HeLa 210 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 210 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 138 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 173 bp overlap
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